PDF Highlights GitHub - akaalias/obsidian-extract-pdf-highlights: Extract highlights, underlines and annotations from your PDFs into Obsidian (Alexis Rondeau, ).Annotator GitHub - elias-sundqvist/obsidian-annotator: A plugin for reading and annotating PDFs and EPUBs in obsidian.Obsidian Extract PDF Annotations Plugin GitHub - munach/obsidian-extract-pdf-annotations: This is a plugin for.Alfred workflow by (there’s two I think). ![]() mdnotes workflow by (mdnotes Zotero plugin by ).A key to all of this is CLEAR and SIMPLE documentation that assumes no knowledge on the part of the user with regards to settings in Zotero or templating in Obsidian. As these are endless, the main issue will be to keep it as simple as possible for the set-and-forget crowd, but offer the tweak-and-perfect people the option to modify, personalise, tweak (perhaps in ‘advanced settings’?). These can also collide in the one researcher, who may have particular needs for one project, but different ones for another (eg. the interest in modification of the workflow (set-and-forget, or tweak-and-perfect).whether the goal is to finish most of the work in Obsidian, or get it ready enough for export into a ‘normal’ word processor for sharing with colleagues, etc.the individual online/offline needs of the individual. ![]() the individual preference/style/habits of annotating or working with annotations.the intended use of the references and annotations.academic/non-academic/hobby researcher/student/etc) the level of academic rigour required/desired by the researcher (e.g.the researchers’ level of technological proficiency.This doesn’t seem like too much trouble, but the differences in approaching these tasks is multifaceted and influenced by: have the reference data available to them (extract) to.extract the annotated passages and have them available in Obsidian for future use (e.g.The reference data gets entered into a reference manager (e.g. The plugins seem to all solve slightly different problems or the same problem in slightly different ways…but the basic premise is this:Ī researcher reads a PDF and highlights passages. So here goes…: Notes on PDF Zotero Obsidian workflows It’s supposed to be a central collection point for ideas, requirements, and questions - as well as gratitude to the folks who actually develop these amazing plugins! What follows is by necessity limited to my own experience and requirements, so it really is a working document that needs input from users who’ve used (developed) plugins and workflows that I have not (or am not even aware of. Since Zotero 6 has just gone live, a lot of workflows have broken, as it was a MAJOR release that effectively made Zotfile and MDnotes unusable (see wonderful workflow description here in the forum). ![]() So, here is a start in in collating information on the current state of things with regards to how to get information out of a PDF and into Obsidian, with a focus on the path via Zotero. In the filename field, enter a name ending in ".bib" for Bibtex or ".ris" for RIS export and click Save.Hi requested help in collating information about the many different plugins dealing with workflows from PDF to Obsidian (often via Zotero), and there has been a Discord thread on pooling resources and developing one plugin instead of maintaining and developing a multitude of similar but different plugins according to a (very wide variety) of preferences. In the box labeled Output Style, select either Bibtex Export or 'RefMan (RIS) Export'. Check the 'Bibtex Export' and 'RefMan (RIS) Export' options in the list that appears then close the window. In EndNote select Edit > Output Styles > Open Style Manager. In addition to the EndNote XML format, you can also export references to Bibtex and RIS format in EndNote which Mendeley Desktop can also import. Select the file which you exported from EndNote and click Open, then sync your library to save the references to Mendeley Web too Open Mendeley Desktop and click File > Add Files In the window that appears, there is a box labeled 'Files of type:', in that box select 'XML (*.xml)'Ĭhoose a name for the file and click the 'Save' button In EndNote, highlight the references that you want to import into Mendeley Desktop, and click File > Export. ![]() To import your EndNote library, you need to first export your references to an 'EndNote XML' file and then import that into Mendeley Desktop.
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